trying to get the Essential Project to work... I I think I may require a little help.
I'm building the multi-User build.
Web Server seems fine
Protege Server seems fine
MySql seems fine
Client Seems fine...
However, when I try to Define an additional repository for essential_baseline_v4.3.1 I get the following errors when I reload the server using run_protege_server.bat...
any idea what I'm doing wrong?
Thanks
Code: Select all
Protege server is starting...
Protege 3.5 Build 663, JVM 1.6.0_01-b06, memory=466M, Windows Vista, encoding=UT
F-8, language=en, country=US
Server port = 0, registry port = 1099, compressed stream
Using metaproject from: file:/C:/EssentialAM/Repository/metaproject.pprj
Loading project Collaborative Newspaper from file:/C:/Program%20Files/Protege_3.
5/examples/collaborativeNewspaper/collaborativeNewspaper.pprj
Loading project Collaborative Newspaper Annotations from file:/C:/Program%20File
s/Protege_3.5/examples/collaborativeNewspaper/annotation_collaborativeNewspaper.
pprj
Loading project Collaborative Pizza from file:/C:/Program%20Files/Protege_3.5/ex
amples/collaborativePizza/collaborativePizza.owl.pprj
Backwards compatibility fixup for OWL project file (really ancient one)
Loading triples for: file:/C:/Program%20Files/Protege_3.5/examples/collaborative
Pizza/collaborativePizza.owl
Completed triple loading after 360 ms
Importing http://protege.stanford.edu/plugins/owl/protege from location: C:\Prog
ram Files\Protege_3.5\plugins\edu.stanford.smi.protegex.owl\protege.owl
Loading triples for: http://protege.stanford.edu/plugins/owl/protege
Completed triple loading after 13 ms
http://protege.stanford.edu/plugins/owl/protege already imported as triple store
http://protege.stanford.edu/plugins/owl/protege
Postprocess: Process entities with incorrect Java type (0 entities) ... 0 ms
Postprocess: Process metaclasses (3 metaclasses) ... 0 ms
Postprocess: Process subclasses of rdf:List (1 classes) ... 0 ms
Postprocess: Instances with multiple types (122 instances) ... 5 ms
Postprocess: Add inferred superclasses ... 3 ms
Postprocess: Process orphan classes (98 classes) ... 1 ms
Postprocess: Generalized Concept Inclusion (0 axioms) ... 0 ms
Postprocess: Abstract classes... 0 ms
Postprocess: Domain and range of properties... 5 ms
Postprocess: Possibly typed entities (0 resources) ... 0 ms
Updating underlying frames model in 6 ms
Loading project Collaborative Pizza Annotations from file:/C:/Program%20Files/Pr
otege_3.5/examples/collaborativePizza/annotation_collaborativePizza.owl.pprj
Loading project Newspaper from file:/C:/Program%20Files/Protege_3.5/examples/new
spaper/newspaper.pprj
Loading project Pizza from file:/C:/Program%20Files/Protege_3.5/examples/pizza/p
izza.owl.pprj
Backwards compatibility fixup for OWL project file (really ancient one)
Loading triples for: file:/C:/Program%20Files/Protege_3.5/examples/pizza/pizza.o
wl
Completed triple loading after 307 ms
Importing http://protege.stanford.edu/plugins/owl/protege from location: C:\Prog
ram Files\Protege_3.5\plugins\edu.stanford.smi.protegex.owl\protege.owl
Loading triples for: http://protege.stanford.edu/plugins/owl/protege
Completed triple loading after 11 ms
http://protege.stanford.edu/plugins/owl/protege already imported as triple store
http://protege.stanford.edu/plugins/owl/protege
Postprocess: Process entities with incorrect Java type (0 entities) ... 0 ms
Postprocess: Process metaclasses (3 metaclasses) ... 0 ms
Postprocess: Process subclasses of rdf:List (1 classes) ... 0 ms
Postprocess: Instances with multiple types (122 instances) ... 4 ms
Postprocess: Add inferred superclasses ... 1 ms
Postprocess: Process orphan classes (97 classes) ... 1 ms
Postprocess: Generalized Concept Inclusion (0 axioms) ... 0 ms
Postprocess: Abstract classes... 0 ms
Postprocess: Domain and range of properties... 2 ms
Postprocess: Possibly typed entities (0 resources) ... 0 ms
Updating underlying frames model in 5 ms
Loading project Wines from file:/C:/Program%20Files/Protege_3.5/examples/wines/w
ines.pprj
Loaded 5000 instances: essential_baseline_v1.2_ProjectKB_Class18492
Loaded 6000 instances: essential_baseline_v1.2_ProjectKB_Class19557
Loaded 7000 instances: essential_baseline_v3.0.4_ProjectKB_Class15364
Loaded 8000 instances: essential_baseline_v1_ProjectKB_Instance_21308
Set type on 5000 instances: essential_baseline_v1_ProjectKB_Instance_21368
Loaded 9000 instances: essential_baseline_v1_ProjectKB_Instance_24304
Set type on 6000 instances: essential_baseline_v1_ProjectKB_Instance_24566
Loaded 10000 instances: essential_baseline_v1_ProjectKB_Instance_30520
Set type on 7000 instances: essential_baseline_v1_ProjectKB_Instance_31201
Loaded 11000 instances: essential_baseline_v1_ProjectKB_Instance_31725
Set type on 8000 instances: essential_baseline_v1_ProjectKB_Instance_35082
Loaded 12000 instances: essential_baseline_v1_ProjectKB_Instance_35223
Loaded 13000 instances: essential_baseline_v1_ProjectKB_Instance_42298
Set type on 9000 instances: essential_baseline_v1_ProjectKB_Instance_42428
Loaded 14000 instances: essential_baseline_v1_ProjectKB_Instance_46800
Set type on 10000 instances: essential_baseline_v1_ProjectKB_Instance_4710
Loaded 15000 instances: essential_baseline_v1_ProjectKB_Instance_49880
Set type on 11000 instances: essential_baseline_v1_ProjectKB_Instance_53906
Loaded 16000 instances: essential_baseline_v3.0.3_ProjectKB_Class4500
Set type on 12000 instances: essential_baseline_v1_ProjectKB_Instance_5714
Loaded 17000 instances: essential_baseline_v1_ProjectKB_Instance_58237
Set type on 13000 instances: essential_baseline_v1_ProjectKB_Instance_59894
Loaded 18000 instances: essential_baseline_v2.0_ProjectKB_Class2530
Set type on 14000 instances: essential_baseline_v1_ProjectKB_Instance_68117
Loaded 19000 instances: essential_baseline_v1_ProjectKB_Instance_6889
Set type on 15000 instances: essential_baseline_v1_ProjectKB_Instance_8342
Loaded 20000 instances: essential_baseline_v1_ProjectKB_Instance_8363
Loaded 21000 instances: essential_baseline_v2.0_ProjectKB_Class11029
Set type on 16000 instances: essential_baseline_v2.0_ProjectKB_Class115038
Loaded 22000 instances: essential_baseline_v2.0_ProjectKB_Class12129
Set type on 17000 instances: essential_baseline_v2.0_ProjectKB_Class12592
Loaded 23000 instances: essential_baseline_v2.0_ProjectKB_Class135943
Set type on 18000 instances: essential_baseline_v2.0_ProjectKB_Class136446
Loaded 24000 instances: essential_baseline_v2.0_ProjectKB_Class143134
Set type on 19000 instances: essential_baseline_v2.0_ProjectKB_Class16072
Loaded 25000 instances: essential_baseline_v2.0_ProjectKB_Class21908
Set type on 20000 instances: essential_baseline_v2.0_ProjectKB_Class22571
Loaded 26000 instances: essential_baseline_v2.0_ProjectKB_Class22973
Set type on 21000 instances: essential_baseline_v2.0_ProjectKB_Class26579
Loaded 27000 instances: essential_baseline_v2.0_ProjectKB_Class27299
Set type on 22000 instances: essential_baseline_v2.0_ProjectKB_Class2789
Loaded 28000 instances: essential_baseline_v2.0_ProjectKB_Class28446
Set type on 23000 instances: essential_baseline_v2.0_ProjectKB_Class29119
Loaded 29000 instances: essential_baseline_v2.0_ProjectKB_Class2974
Set type on 24000 instances: essential_baseline_v2.0_ProjectKB_Class32011
Loaded 30000 instances: essential_baseline_v2.0_ProjectKB_Class3905
Set type on 25000 instances: essential_baseline_v2.0_ProjectKB_Class42346
Loaded 31000 instances: essential_baseline_v2.0_ProjectKB_Class4455
Set type on 26000 instances: essential_baseline_v2.0_ProjectKB_Class46023
Loaded 32000 instances: essential_baseline_v2.0_ProjectKB_Class46191
Set type on 27000 instances: essential_baseline_v2.0_ProjectKB_Class47043
Loaded 33000 instances: essential_baseline_v2.0_ProjectKB_Class47154
Set type on 28000 instances: essential_baseline_v2.0_ProjectKB_Class52226
Loaded 34000 instances: essential_baseline_v2.0_ProjectKB_Class52339
Set type on 29000 instances: essential_baseline_v2.0_ProjectKB_Class5980
Loaded 35000 instances: essential_baseline_v2.0_ProjectKB_Class60678
Set type on 30000 instances: essential_baseline_v2.0_ProjectKB_Class6585
Loaded 36000 instances: essential_baseline_v2.0_ProjectKB_Class6818
Set type on 31000 instances: essential_baseline_v2.0_ProjectKB_Class7375
Loaded 37000 instances: essential_baseline_v2.0_ProjectKB_Class7664
Set type on 32000 instances: essential_baseline_v2.0_ProjectKB_Class8355
Loaded 38000 instances: essential_baseline_v2.0_ProjectKB_Class8783
Set type on 33000 instances: essential_baseline_v2.0_ProjectKB_Class9401
Loaded 39000 instances: essential_baseline_v2.0_ProjectKB_Class96271
Set type on 34000 instances: essential_baseline_v3.0.2_ProjectKB_Class4041
Loaded 40000 instances: essential_baseline_v3.0.3_ProjectKB_Class11070
Loaded 41000 instances: essential_baseline_v3.0.3_ProjectKB_Class2051
Set type on 35000 instances: essential_baseline_v3.0.3_ProjectKB_Class2093
Loaded 42000 instances: essential_baseline_v3.0.3_ProjectKB_Class72048
Set type on 36000 instances: essential_baseline_v3.0.4_ProjectKB_Class10166
Loaded 43000 instances: essential_baseline_v3.0.4_ProjectKB_Class10704
Set type on 37000 instances: essential_baseline_v3.0.4_ProjectKB_Class12601
Loaded 44000 instances: essential_baseline_v3.0.4_ProjectKB_Class12713
Set type on 38000 instances: essential_baseline_v3.0.4_ProjectKB_Class13624
Loaded 45000 instances: essential_baseline_v3.0.4_ProjectKB_Class13751
Loaded 46000 instances: essential_baseline_v3.0.4_ProjectKB_Class16351
Loaded 47000 instances: essential_baseline_v3.0.4_ProjectKB_Class13931
Set type on 39000 instances: essential_baseline_v3.0.4_ProjectKB_Class14653
Loaded 48000 instances: essential_baseline_v3.0.4_ProjectKB_Class15014
Set type on 40000 instances: essential_baseline_v3.0.4_ProjectKB_Class15698
Set type on 41000 instances: essential_baseline_v3.0.4_ProjectKB_Class16698
Loaded 49000 instances: essential_baseline_v3.0.4_ProjectKB_Class2361
Loaded 50000 instances: essential_baseline_v3.0.4_ProjectKB_Class3601
Loaded 51000 instances: essential_baseline_v3.0.4_ProjectKB_Class4673
Set type on 42000 instances: essential_baseline_v3.0.4_ProjectKB_Class4910
Loaded 52000 instances: essential_baseline_v3.0.4_ProjectKB_Class5769
Loaded 53000 instances: essential_baseline_v3.0.4_ProjectKB_Class6822
Loaded 54000 instances: essential_baseline_v3.0.4_ProjectKB_Class8521
Set type on 43000 instances: essential_baseline_v3.0.4_ProjectKB_Class8956
Loaded 55000 instances: essential_baseline_v3.0.4_ProjectKB_Class9562
Set type on 44000 instances: essential_baseline_v3.0.6_ProjectKB_Class19843
Loaded 56000 instances: essential_baseline_v3.0.6_ProjectKB_Class20127
Set type on 45000 instances: essential_baseline_v3.0.6_ProjectKB_Class20858
Loaded 57000 instances: essential_baseline_v3.0_ProjectKB_Class16791
Set type on 46000 instances: essential_baseline_v3.0_ProjectKB_Class17636
Loaded 58000 instances: essential_baseline_v3.0_ProjectKB_Class1884
Set type on 47000 instances: essential_baseline_v3.0_ProjectKB_Class2269
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
at java.util.ArrayList.<init>(Unknown Source)
at java.util.ArrayList.<init>(Unknown Source)
at edu.stanford.smi.protege.storage.clips.Parser.slotValueFields(Unknown
Source)
at edu.stanford.smi.protege.storage.clips.Parser.slotValue(Unknown Sourc
e)
at edu.stanford.smi.protege.storage.clips.Parser.instance(Unknown Source
)
at edu.stanford.smi.protege.storage.clips.Parser.parseKnowledgeBase(Unkn
own Source)
at edu.stanford.smi.protege.storage.clips.Parser.loadInstances(Unknown S
ource)
at edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory.load
KnowledgeBase(Unknown Source)
at edu.stanford.smi.protege.model.Project.loadProjectKB(Unknown Source)
at edu.stanford.smi.protege.model.Project.<init>(Unknown Source)
at edu.stanford.smi.protege.model.Project.loadProjectFromURI(Unknown Sou
rce)
at edu.stanford.smi.protege.server.Server.createProject(Unknown Source)
at edu.stanford.smi.protege.server.Server.initializeProjects(Unknown Sou
rce)
at edu.stanford.smi.protege.server.Server.initialize(Unknown Source)
at edu.stanford.smi.protege.server.Server.<init>(Unknown Source)
at edu.stanford.smi.protege.server.Server.startServer(Unknown Source)
at edu.stanford.smi.protege.server.Server.main(Unknown Source)